species:   Rhsol
pid:       PID0498
parent:    Rhi-milR-114
paralog:   
locus:     KB317831.1:15754-15831
matures:   ['UAUGUGUGACAUCUGAAGGAAG', 'UGCUUGUUGAAGCAGAGUCUAUUGUGCAAU']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317831.1:15754-15831

49 out of bounds
42 alignments
22 proper strand
20 stranded perfect matches

        *************************    *********************************        
CAGGGUGGAGUAUGUGUGACAUCUGAAGGAAGUCUUGUCUUGCUUGUUGAAGCAGAGUCUAUUGUGCAAUCUAGCCAA
..((.(((((((((...(((.(((((((.(((......))).))).......)))))))...)))))..)))).))..
----------UAUGUGUGACAUCUGAAGGAAG---------------------------------------------- l=22 a=1 c
----------------------------------------UGCUUGUUGAAGCAGAGUCUAUUGUGCAAU-------- l=30 a=0 c*
----------UAUGUGUGACAUCUGAAGGAAGU--------------------------------------------- l=23 a=7 ma
---------------------------------------UUGCUUGUUGAAGCAGAGUCUAUUGUGCAAU-------- l=31 a=0 ma*

-----UGGAGUAUGUGUGACAUCUGAAGG------------------------------------------------- l=24 a=1 
----------UAUGUGUGACAUCUGAAGG------------------------------------------------- l=19 a=1 
----------UAUGUGUGACAUCUGAAGGA------------------------------------------------ l=20 a=2 
----------UAUGUGUGACAUCUGAAGGAAG---------------------------------------------- l=22 a=1 (c)
----------UAUGUGUGACAUCUGAAGGAAGU--------------------------------------------- l=23 a=7 (ma)
----------UAUGUGUGACAUCUGAAGGAAGUC-------------------------------------------- l=24 a=4 
-----------AUGUGUGACAUCUGAAGGAAGUC-------------------------------------------- l=23 a=1 
------------UGUGUGACAUCUGAAGGAAG---------------------------------------------- l=20 a=1 
------------UGUGUGACAUCUGAAGGAAGU--------------------------------------------- l=21 a=1 
-------------------------------------------UUGUUGAAGCAGAGUCUAUUGUG------------ l=23 a=1 
--------------------------------------------UGUUGAAGCgGAGUCUAUUGUG------------ l=22 a=1 
--------------------------------------------UGUUGAAGCAGAGUCUAUUGUGg----------- l=23 a=1 

mb-00111
ax-1001011
ku-01
ss-111110101000
fn-101
